STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHC3Polyhomeotic-like protein 3. (1018 aa)    
Predicted Functional Partners:
CBX8
Chromobox 8.
    
 0.812
CBX4
E3 SUMO-protein ligase CBX4.
    
 0.725
RNF2
E3 ubiquitin-protein ligase RING2.
    
 0.713
LOC110470611-2
Polycomb complex protein BMI-1.
    
 0.602
PCGF2
Polycomb group RING finger protein 2.
    
 0.602
CBX6
Chromobox 6.
    
 0.594
SCMH1
Polycomb protein SCMH1.
    
0.575
SCML2
Sex comb on midleg-like protein 2.
    
0.574
CBX2
Chromobox 2.
    
 0.563
EED
Polycomb protein EED.
    
 0.552
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.