Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SGTASmall glutamine-rich tetratricopeptide repeat-containing protein alpha. (359 aa)    
Predicted Functional Partners:
GET4
Golgi to ER traffic protein 4.
   
 0.975
GET1
Tail-anchored protein insertion receptor WRB.
    
 0.905
GET3
ATPase asna1.
   
 0.902
HSPA4
Heat shock protein 4.
   
 0.894
SEC61B
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.833
STX5
Syntaxin-5.
    
 0.760
ATP13A1
Manganese-transporting ATPase 13A1.
   
  
 0.728
RNF126
E3 ubiquitin-protein ligase RNF126.
   
  
 0.710
HSPA8
Heat shock cognate protein.
   
 0.701
HSPA2
Heat shock protein; Belongs to the heat shock protein 70 family.
   
 0.701
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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