Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000003873annotation not available (190 aa)    
Predicted Functional Partners:
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.981
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.974
SYMPK
Symplekin.
   
 0.971
WDR33
Pre-mRNA 3' end processing protein WDR33.
   
 0.970
FIP1L1
Pre-mRNA 3'-end-processing factor FIP1.
   
 0.960
CPSF4
Cleavage and polyadenylation specificity factor subunit 4.
   
 0.950
CSTF3
Cleavage stimulation factor subunit 3.
   
 0.943
CSTF2
Cleavage stimulation factor subunit 2.
   
 0.936
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
    
 0.929
LOC110467884
Pre-mRNA 3'-end-processing factor FIP1.
   
 0.914
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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