Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SEC62Translocation protein SEC62. (400 aa)    
Predicted Functional Partners:
SEC63
Translocation protein SEC63.
   
 0.999
SEC61B
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 
 0.951
SEC61G
Protein transport protein Sec61 subunit gamma.
   
 
 0.948
SPCS1
Signal peptidase complex subunit 1.
   
 
 0.906
SPCS2
Signal peptidase complex subunit 2.
   
 
 0.893
CCPG1
Cell cycle progression protein 1.
   
 
 0.882
SEC61A2
Protein transport protein Sec61 subunit alpha isoform 2.
   
 
 0.865
SEC61A1
Protein transport protein Sec61 subunit alpha isoform 1.
   
 
 0.865
ALDH18A1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
      
 0.834
STK39
STE20/SPS1-related proline-alanine-rich protein kinase.
    
 
 0.824
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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