Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AVL9Late secretory pathway protein AVL9. (636 aa)    
Predicted Functional Partners:
RIC1
RAB6A-GEF complex partner protein 1.
      
 0.874
RAB30
Ras-related protein Rab-30.
      
 0.873
DENND11
Protein LCHN.
      
 0.724
DENND10
Protein FAM45A.
      
 0.723
DENND6A
Protein DENND6A.
      
 0.699
KBTBD2
Kelch repeat and BTB domain-containing protein 2.
      
 0.676
RAB33B
Ras-related protein Rab-33B.
      
 0.576
ENSLSDP00000016006
Ras-related protein Rab-33B.
      
 0.576
DENND2C
DENN domain-containing protein 2C.
      
 0.568
RAB33A
Ras-related protein Rab-33A.
      
 0.567
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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