STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMX1Thioredoxin-related transmembrane protein 1. (285 aa)    
Predicted Functional Partners:
MSRA
Mitochondrial peptide methionine sulfoxide reductase.
   
 0.597
TMX2
Thioredoxin-related transmembrane protein 2.
    
 
 0.563
TRMT1L
TRMT1-like protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.532
CCDC90B
Coiled-coil domain-containing protein 90B, mitochondrial.
      
 0.529
TXNDC15
Thioredoxin domain-containing protein 15.
      
 0.527
CANX
Calnexin.
   
 0.516
CALR
Calreticulin.
   
 0.507
RRM1
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.482
CLGN
Calmegin.
   
 0.455
ERO1A
ERO1-like protein alpha.
   
 0.444
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.