STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX39BSpliceosome RNA helicase Ddx39b. (198 aa)    
Predicted Functional Partners:
ALYREF
THO complex subunit 4.
   
 0.998
THOC2
THO complex subunit 2.
   
 0.995
POLDIP3
Polymerase delta-interacting protein 3.
   
 0.975
THOC1
THO complex subunit 1.
   
 0.975
THOC5
THO complex subunit 5.
   
 0.975
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
  
0.972
THOC7
THO complex subunit 7.
   
 0.970
SARNP
SAP domain-containing ribonucleoprotein.
   
 0.965
ZC3H13
Zinc finger CCCH domain-containing protein 13.
   
 0.962
ENSLSDP00000004565
annotation not available
   
 0.957
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.