Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DDX39BSpliceosome RNA helicase Ddx39b. (198 aa)    
Predicted Functional Partners:
ALYREF
THO complex subunit 4.
   
 0.996
SARNP
SAP domain-containing ribonucleoprotein.
   
 0.975
THOC2
THO complex subunit 2.
   
 0.975
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.975
THOC3
THO complex subunit 3.
    
 0.972
THOC1
THO complex subunit 1.
   
 0.971
THOC7
THO complex subunit 7.
   
 0.971
DHX35
Putative ATP-dependent RNA helicase DHX35.
    
 0.969
THOC5
THO complex subunit 5.
   
 0.968
NCBP1
Nuclear cap-binding protein subunit 1.
   
 0.967
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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