Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
PHYHD1Phytanoyl-CoA dioxygenase domain-containing protein 1. (345 aa)    
Predicted Functional Partners:
PEX7
Peroxisomal targeting signal 2 receptor.
    
 0.727
PLPP2
Lipid phosphate phosphohydrolase 2.
      
 0.680
AASDH
Acyl-CoA synthetase family member 4.
  
  
 0.596
PKP3
Plakophilin-3.
      
 0.567
ARC
Activity-regulated cytoskeleton-associated protein.
      
 0.567
GALE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
    
 0.560
NUP188
Nucleoporin NUP188.
 
      0.540
PEX12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
     
 0.515
ALDH18A1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
      
 0.515
PEX10
Peroxisome biogenesis factor 10.
   
 
 0.484
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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