Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TIMP2Metalloproteinase inhibitor 2. (220 aa)    
Predicted Functional Partners:
MMP14
Matrix metalloproteinase-14; Belongs to the peptidase M10A family.
   
 0.960
MMP15
Matrix metalloproteinase-15.
   
 0.960
MMP2
Type IV collagenase.
   
 0.900
LOC110470043
Stromelysin-1.
   
 0.864
TIMP3
Metalloproteinase inhibitor 3.
   
 
 0.857
LOC110470055
Stromelysin-1-like.
   
 0.856
LOC110476147
Matrix metalloproteinase-9.
   
 0.853
LOC110479789
Matrix metalloproteinase-9.
   
 0.853
TGFBR3
Transforming growth factor beta receptor type 3.
   
 
 0.839
MMP13
Collagenase 3.
   
 0.811
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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