STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBFOX3RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (412 aa)    
Predicted Functional Partners:
ENSLSDP00000008068
annotation not available
   
 0.646
GFAP
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
   
 0.596
TANA
Tanabin; Belongs to the intermediate filament family.
    
 
 0.573
RBM45
RNA-binding protein 45.
    
 
 0.552
DCX
Neuronal migration protein doublecortin.
      
 0.541
NCBP1
Nuclear cap-binding protein subunit 1.
    
 0.498
CALB1
Calbindin.
   
 
 0.481
IQSEC3
IQ motif and SEC7 domain-containing protein 3.
   
 
 0.475
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
      
 0.472
SRSF2
Serine/arginine-rich splicing factor 2.
    
 0.449
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.