STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRATCarnitine O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family. (627 aa)    
Predicted Functional Partners:
SCP2
Non-specific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.841
HSDL2
Hydroxysteroid dehydrogenase-like protein 2.
   
 0.779
SLC25A20
Mitochondrial carnitine/acylcarnitine carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.752
HTD2
Hydroxyacyl-thioester dehydratase type 2, mitochondrial.
   
 0.713
RPP14
Ribonuclease P protein subunit p14.
   
 0.713
SLC18A3
Vesicular acetylcholine transporter.
 
 
  
 0.668
PEX14
Peroxisomal membrane protein PEX14.
    
 0.663
PEX5
Peroxisomal targeting signal 1 receptor.
    
 0.645
PEX5L
PEX5-related protein.
    
 0.645
ACOX1
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.633
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.