Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D16TBC1 domain family member 16. (770 aa)    
Predicted Functional Partners:
RAB4A
Ras-related protein Rab-4A.
    
 0.898
TBC1D20
TBC1 domain family member 20.
      
 0.687
TBC1D19
TBC1 domain family member 19.
      
 0.684
PPM1L
Protein phosphatase 1L.
      
 0.683
DGKE
Diacylglycerol kinase.
      
 0.680
PCGF5
Polycomb group RING finger protein 5.
      
 0.676
CDC16
Cell division cycle protein 16.
      
 0.647
PLA2G6
85/ calcium-independent phospholipase A2.
      
 0.631
EVI5
Ecotropic viral integration site 5.
      
 0.626
WDR5
WD repeat-containing protein 5.
      
 0.580
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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