Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALKBH1Alkylated DNA repair protein alkB 1. (463 aa)    
Predicted Functional Partners:
ALKBH5
RNA demethylase ALKBH5.
      
 0.874
ALKBH2
Alpha-ketoglutarate-dependent dioxygenase alkB 2.
      
 0.874
ALKBH3
Alpha-ketoglutarate-dependent dioxygenase alkB 3.
      
 0.874
ALKBH4
Alpha-ketoglutarate-dependent dioxygenase alkB 4.
   
  
 0.873
ALKBH7
Alpha-ketoglutarate-dependent dioxygenase alkB 7, mitochondrial.
      
 0.872
FTO
Alpha-ketoglutarate-dependent dioxygenase FTO.
     
 0.870
ALKBH8
Alkylated DNA repair protein alkB 8.
      
 0.836
TRMT6
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.718
N6AMT1
HemK methyltransferase family member 2.
      
 0.714
NSUN3
Putative methyltransferase NSUN3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.689
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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