Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TOR1BTorsin. (344 aa)    
Predicted Functional Partners:
TOR2A
Torsin.
   
   0.726
LOC110478952
Torsin-1A-interacting protein 2.
    
 
 0.693
NAGLU
Alpha-N-acetylglucosaminidase.
   
   0.618
STON2
Stonin-2; Belongs to the Stoned B family.
    
  0.595
COPS4
COP9 signalosome complex subunit 4.
   
  0.590
COPS7A
COP9 signalosome complex subunit 7a.
     
 0.581
COPS8
COP9 signalosome complex subunit 8.
   
 
  0.571
COPS2
COP9 signalosome complex subunit 2.
   
 
  0.571
NEDD8
Ubiquitin-like protein Nedd8.
     
 0.553
COPS5
COP9 signalosome complex subunit 5.
     
 0.552
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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