Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDCD10Programmed cell death protein 10. (212 aa)    
Predicted Functional Partners:
CCM2
Malcavernin.
    
 0.997
STK26
Serine/threonine-protein kinase 26.
   
 
 0.961
CTTNBP2NL
CTTNBP2 N-terminal-like protein.
    
 
 0.961
SLMAP
Sarcolemmal membrane-associated protein.
   
 
 0.937
LOC110484605
MOB-like protein phocein.
   
 
 0.933
TRAF3IP3
TRAF3-interacting JNK-activating modulator.
    
 
 0.933
C4orf19
Uncharacterized protein.
    
 
 0.924
KRIT1
Krev interaction trapped protein 1.
    
 
 0.886
SIKE1
Suppressor of IKBKE 1.
   
 
 0.885
FGFR1OP2
FGFR1 oncogene partner 2.
   
 
 0.885
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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