STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C9orf78Uncharacterized protein C9orf78. (289 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.874
MED22
Mediator of RNA polymerase II transcription subunit 22.
   
  
 0.773
NKAP
NF-kappa-B-activating protein.
   
 
  0.769
SNRNP200
U5 small nuclear ribonucleoprotein helicase.
    
 
 0.738
ENSLSDP00000010709
annotation not available
    
 
 0.738
CWC22
Pre-mRNA-splicing factor CWC22.
    
 0.708
SYF2
Pre-mRNA-splicing factor SYF2.
   
 
 0.682
ENSLSDP00000008292
annotation not available
   
 
 0.680
SLU7
Pre-mRNA-splicing factor SLU7.
   
 
 0.680
DHX35
Putative ATP-dependent RNA helicase DHX35.
   
 0.677
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.