STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP20Ubiquitin carboxyl-terminal hydrolase. (911 aa)    
Predicted Functional Partners:
CCP110
UPF0505 protein C16orf62.
    
 0.668
LAP3
Cytosol aminopeptidase.
    
 0.635
MYSM1
Histone H2A deubiquitinase MYSM1.
   
 
 0.599
ADRB1
Adrenergic receptor beta-1.
    
 0.594
ADRB2
Beta-2 adrenergic receptor.
    
 0.594
YARS1
Tyrosine--tRNA ligase.
      
 0.570
RFC5
Replication factor C subunit 5.
    
 0.559
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.555
C9orf78
Uncharacterized protein C9orf78.
    
 
 0.509
MRPS9
28S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.488
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.