IQCB1 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

IQCB1

IQ calmodulin-binding motif-containing protein 1. (594 aa)

Predicted Functional Partners:

CEP290

0.995

HAUS8

0.805

EXOC1

0.758

NPHP4

0.745

NPHP1

0.738

LOC110479108

0.729

RPGR

0.722

NPAT

0.695

KCNJ13

0.683

FANCB

0.682

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEP290	HAUS8	ENSLSDP00000023724	ENSLSDP00000009523	Centrosomal protein.	HAUS augmin-like complex subunit 8.	0.467
CEP290	IQCB1	ENSLSDP00000023724	ENSLSDP00000004166	Centrosomal protein.	IQ calmodulin-binding motif-containing protein 1.	0.995
CEP290	KCNJ13	ENSLSDP00000023724	ENSLSDP00000007984	Centrosomal protein.	Potassium inwardly-rectifying channel subfamily J member 13.	0.435
CEP290	NPHP1	ENSLSDP00000023724	ENSLSDP00000019617	Centrosomal protein.	Nephrocystin-1.	0.820
CEP290	NPHP4	ENSLSDP00000023724	ENSLSDP00000009158	Centrosomal protein.	Nephrocystin-4.	0.718
CEP290	RPGR	ENSLSDP00000023724	ENSLSDP00000009257	Centrosomal protein.	X-linked retinitis pigmentosa GTPase regulator.	0.788
EXOC1	IQCB1	ENSLSDP00000011096	ENSLSDP00000004166	Exocyst complex component 1.	IQ calmodulin-binding motif-containing protein 1.	0.758
FANCB	HAUS8	ENSLSDP00000014426	ENSLSDP00000009523	Fanconi anemia group B protein.	HAUS augmin-like complex subunit 8.	0.518
FANCB	IQCB1	ENSLSDP00000014426	ENSLSDP00000004166	Fanconi anemia group B protein.	IQ calmodulin-binding motif-containing protein 1.	0.682
HAUS8	CEP290	ENSLSDP00000009523	ENSLSDP00000023724	HAUS augmin-like complex subunit 8.	Centrosomal protein.	0.467
HAUS8	FANCB	ENSLSDP00000009523	ENSLSDP00000014426	HAUS augmin-like complex subunit 8.	Fanconi anemia group B protein.	0.518
HAUS8	IQCB1	ENSLSDP00000009523	ENSLSDP00000004166	HAUS augmin-like complex subunit 8.	IQ calmodulin-binding motif-containing protein 1.	0.805
IQCB1	CEP290	ENSLSDP00000004166	ENSLSDP00000023724	IQ calmodulin-binding motif-containing protein 1.	Centrosomal protein.	0.995
IQCB1	EXOC1	ENSLSDP00000004166	ENSLSDP00000011096	IQ calmodulin-binding motif-containing protein 1.	Exocyst complex component 1.	0.758
IQCB1	FANCB	ENSLSDP00000004166	ENSLSDP00000014426	IQ calmodulin-binding motif-containing protein 1.	Fanconi anemia group B protein.	0.682
IQCB1	HAUS8	ENSLSDP00000004166	ENSLSDP00000009523	IQ calmodulin-binding motif-containing protein 1.	HAUS augmin-like complex subunit 8.	0.805
IQCB1	KCNJ13	ENSLSDP00000004166	ENSLSDP00000007984	IQ calmodulin-binding motif-containing protein 1.	Potassium inwardly-rectifying channel subfamily J member 13.	0.683
IQCB1	LOC110479108	ENSLSDP00000004166	ENSLSDP00000020414	IQ calmodulin-binding motif-containing protein 1.	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family.	0.729
IQCB1	NPAT	ENSLSDP00000004166	ENSLSDP00000024892	IQ calmodulin-binding motif-containing protein 1.	Protein NPAT.	0.695
IQCB1	NPHP1	ENSLSDP00000004166	ENSLSDP00000019617	IQ calmodulin-binding motif-containing protein 1.	Nephrocystin-1.	0.738