RNPC3 protein (Lonchura striata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

RNPC3

RNA-binding protein 40. (418 aa)

Predicted Functional Partners:

ZMAT5

0.956

SNRPE

0.870

ZCRB1

0.863

SNRPD1

0.861

SNRPD3

0.860

SF3B6

0.856

SNRPG

0.853

SF3B1

0.852

SNRPF

0.851

SF3B4

0.835

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RNPC3	SF3B1	ENSLSDP00000004247	ENSLSDP00000001073	RNA-binding protein 40.	Splicing factor 3B subunit 1.	0.852
RNPC3	SF3B4	ENSLSDP00000004247	ENSLSDP00000016777	RNA-binding protein 40.	Splicing factor 3B subunit 4.	0.835
RNPC3	SF3B6	ENSLSDP00000004247	ENSLSDP00000003227	RNA-binding protein 40.	Splicing factor 3B subunit 6.	0.856
RNPC3	SNRPD1	ENSLSDP00000004247	ENSLSDP00000003938	RNA-binding protein 40.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.861
RNPC3	SNRPD3	ENSLSDP00000004247	ENSLSDP00000012684	RNA-binding protein 40.	Small nuclear ribonucleoprotein Sm D3.	0.860
RNPC3	SNRPE	ENSLSDP00000004247	ENSLSDP00000012756	RNA-binding protein 40.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.870
RNPC3	SNRPF	ENSLSDP00000004247	ENSLSDP00000023577	RNA-binding protein 40.	Small nuclear ribonucleoprotein F.	0.851
RNPC3	SNRPG	ENSLSDP00000004247	ENSLSDP00000023583	RNA-binding protein 40.	Small nuclear ribonucleoprotein G.	0.853
RNPC3	ZCRB1	ENSLSDP00000004247	ENSLSDP00000008992	RNA-binding protein 40.	Zinc finger CCHC-type and RNA-binding motif-containing protein 1.	0.863
RNPC3	ZMAT5	ENSLSDP00000004247	ENSLSDP00000018205	RNA-binding protein 40.	Zinc finger matrin-type protein 5.	0.956
SF3B1	RNPC3	ENSLSDP00000001073	ENSLSDP00000004247	Splicing factor 3B subunit 1.	RNA-binding protein 40.	0.852
SF3B1	SF3B4	ENSLSDP00000001073	ENSLSDP00000016777	Splicing factor 3B subunit 1.	Splicing factor 3B subunit 4.	0.998
SF3B1	SF3B6	ENSLSDP00000001073	ENSLSDP00000003227	Splicing factor 3B subunit 1.	Splicing factor 3B subunit 6.	0.999
SF3B1	SNRPD1	ENSLSDP00000001073	ENSLSDP00000003938	Splicing factor 3B subunit 1.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.980
SF3B1	SNRPD3	ENSLSDP00000001073	ENSLSDP00000012684	Splicing factor 3B subunit 1.	Small nuclear ribonucleoprotein Sm D3.	0.967
SF3B1	SNRPE	ENSLSDP00000001073	ENSLSDP00000012756	Splicing factor 3B subunit 1.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
SF3B1	SNRPF	ENSLSDP00000001073	ENSLSDP00000023577	Splicing factor 3B subunit 1.	Small nuclear ribonucleoprotein F.	0.986
SF3B1	SNRPG	ENSLSDP00000001073	ENSLSDP00000023583	Splicing factor 3B subunit 1.	Small nuclear ribonucleoprotein G.	0.971
SF3B1	ZCRB1	ENSLSDP00000001073	ENSLSDP00000008992	Splicing factor 3B subunit 1.	Zinc finger CCHC-type and RNA-binding motif-containing protein 1.	0.832
SF3B1	ZMAT5	ENSLSDP00000001073	ENSLSDP00000018205	Splicing factor 3B subunit 1.	Zinc finger matrin-type protein 5.	0.964