STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FUBP3Far upstream element-binding protein 3. (565 aa)    
Predicted Functional Partners:
PUF60
Poly(U)-binding-splicing factor PUF60.
   
 
 0.705
QKI
Protein quaking.
   
 
 0.588
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.540
KHDC4
UPF0469 protein KIAA0907.
      
 0.538
PARN
Poly(A)-specific ribonuclease PARN.
   
 0.534
PRRC2C
Protein PRRC2C.
   
 
 0.516
KHDRBS1
KH domain-containing, RNA-binding, signal transduction-associated protein 1.
   
 
 0.495
IMP3
U3 small nucleolar ribonucleoprotein IMP3.
      
 0.473
DCP2
M7GpppN-mRNA hydrolase.
     
 0.448
EXOSC2
Exosome complex component RRP4.
   
  0.437
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.