Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SENP3Sentrin-specific protease 3. (89 aa)    
Predicted Functional Partners:
LAS1L
Ribosomal biogenesis protein LAS1L.
   
 0.896
TEX10
Testis-expressed sequence 10.
   
 0.867
WDR18
WD repeat-containing protein 18.
    
 0.862
NOL9
Polynucleotide 5'-hydroxyl-kinase NOL9.
   
 0.845
SUMO1
Small ubiquitin-related modifier 1.
   
 0.834
CREBZF
CREB/ATF bZIP transcription factor.
   
 0.789
SENP6
Sentrin-specific protease 6.
   
 0.744
KPNB1
Importin subunit beta-1.
  
 
 0.709
ENSLSDP00000000815
Small ubiquitin-related modifier 3-like.
   
 0.659
SUMO2
Small ubiquitin-related modifier.
   
 0.659
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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