STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKD2L1Polycystic kidney disease 2-like 1 protein. (738 aa)    
Predicted Functional Partners:
PKD1L2
Polycystic kidney disease protein 1-like 2.
 
  
 
 0.949
PKD1
Polycystin 1.
 
  
 0.933
PKDREJ
Polycystic kidney disease and receptor for egg jelly-related protein.
    
 0.750
EXOC5
Exocyst complex component 5.
     
 0.717
ITPR3
Inositol 1,4,5-trisphosphate receptor type 3.
      
 0.672
TRPM5
Transient receptor potential cation channel subfamily M member 5; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.600
EXOC4
Exocyst complex component 4.
     
 0.541
SEC63
Translocation protein SEC63.
    
 
 0.538
CALHM1
Calcium homeostasis modulator protein 1.
      
 0.533
IFT20
Intraflagellar transport protein 20.
   
  
 0.533
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.