STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEF1Peflin. (128 aa)    
Predicted Functional Partners:
KLHL12
Kelch-like protein 12.
    
 
 0.871
PDCD6IP
Programmed cell death 6-interacting protein.
    
 
 0.848
SEC31A
Protein transport protein Sec31A.
    
 
 0.764
ANXA11
Annexin.
   
 
 0.739
SEC23IP
SEC23-interacting protein.
    
 
 0.738
HEBP2
Heme-binding protein 2.
    
   0.718
TSG101
Tumor susceptibility gene 101 protein.
   
 
 0.708
SEC31B
Protein transport protein Sec31B.
    
 
 0.702
KLHL25
Kelch-like protein 25.
    
 
 0.592
MYC
Myc proto-oncogene protein.
    
 
 0.589
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.