STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPY19L1Putative C-mannosyltransferase DPY19L1. (642 aa)    
Predicted Functional Partners:
CCDC62
Coiled-coil domain-containing protein 62.
      
 0.595
TSR3
Probable ribosome biogenesis protein RLOC_00006116; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.566
LOC110474883
Protein CASC1.
   
    0.545
PICK1
PRKCA-binding protein.
      
 0.539
FBXL21P
F-box/LRR-repeat protein 3.
      
 0.520
TSR2
Pre-rRNA-processing protein TSR2 homolog.
      
 0.504
AGFG1
Arf-GAP domain and FG repeat-containing protein 1.
      
 0.480
CAPZA2
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
  
 0.400
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.