STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110477969Ras-related protein Rab-33A-like. (228 aa)    
Predicted Functional Partners:
TRAPPC1
Trafficking protein particle complex 1.
    
 0.768
TRAPPC8
Trafficking protein particle complex subunit 8.
    
 0.764
TRAPPC6B
Trafficking protein particle complex subunit 6B.
   
 0.761
TRAPPC4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.761
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.755
TRAPPC2
Trafficking protein particle complex subunit 2.
    
 0.754
USO1
General vesicular transport factor p115.
   
 0.673
TBC1D25
TBC1 domain family member 25.
     
 0.653
RIC1
RAB6A-GEF complex partner protein 1.
    
 0.649
STX5
Syntaxin-5.
    
 0.646
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.