Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAF4BTranscription initiation factor TFIID subunit 4B. (757 aa)    
Predicted Functional Partners:
TAF11
Transcription initiation factor TFIID subunit 11.
    
 0.998
TAF8
Transcription initiation factor TFIID subunit 8.
    
 0.998
TAF12
Transcription initiation factor TFIID subunit 12.
    
 0.996
TAF1
Transcription initiation factor TFIID subunit.
   
 0.995
TAF7
Transcription initiation factor TFIID subunit 7.
   
 0.990
TAF3
Transcription initiation factor TFIID subunit 3.
    
 0.989
TAF10
Transcription initiation factor TFIID subunit 10.
    
 0.989
TAF2
Transcription initiation factor TFIID subunit 2.
    
 0.988
TAF13
Transcription initiation factor TFIID subunit 13.
    
 0.986
LOC110474354
Transcription initiation factor TFIID subunit 9.
    
 0.986
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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