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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAF4BTranscription initiation factor TFIID subunit 4B. (757 aa)    
Predicted Functional Partners:
TAF11
Transcription initiation factor TFIID subunit 11.
    
 0.985
TAF1
Transcription initiation factor TFIID subunit.
    
 0.975
TAF7
Transcription initiation factor TFIID subunit 7.
    
 0.972
TAF2
Transcription initiation factor TFIID subunit 2.
    
 0.959
TAF12
Transcription initiation factor TFIID subunit 12.
    
 0.959
TAF13
Transcription initiation factor TFIID subunit 13.
    
 0.958
LOC110474354
Transcription initiation factor TFIID subunit 9.
    
 0.956
TAF3
Transcription initiation factor TFIID subunit 3.
    
 0.940
TAF10
Transcription initiation factor TFIID subunit 10.
    
 0.936
TBP
TATA-box-binding protein.
    
 0.916
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.