STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein. (434 aa)    
Predicted Functional Partners:
FAM8A1
Protein FAM8A1.
    
 
 0.562
ATF4
Cyclic AMP-dependent transcription factor ATF-4.
   
 
 0.532
TMUB2
Transmembrane and ubiquitin-like domain-containing protein 2.
      
 0.472
RNF185
E3 ubiquitin-protein ligase RNF185.
      
 0.461
EDEM1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.426
AMFR
E3 ubiquitin-protein ligase AMFR.
   
 
 0.403
SYVN1
E3 ubiquitin-protein ligase synoviolin.
   
 
 0.403
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.