Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAX2Paired box protein Pax-2-A. (438 aa)    
Predicted Functional Partners:
POU2AF1
POU domain class 2-associating factor 1.
   
 
 0.768
GATA3
GATA-binding factor 3.
     
 0.763
CD79A
CD79a molecule.
   
 
 0.711
GSC
Homeobox protein goosecoid.
    
 0.682
WT1
Wilms tumor B.
    
 0.639
LMX1B
LIM/homeobox protein LMX-1.2.
    
 0.633
BACH2
Transcription regulator protein BACH2; Belongs to the bZIP family.
   
 
 0.602
BMP4
Bone morphogenetic protein 4.
     
 0.601
GATA2
GATA-binding factor 2.
     
 0.600
VAX2
Ventral anterior homeobox 2a.
     
 0.592
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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