STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMLHETrimethyllysine dioxygenase, mitochondrial. (415 aa)    
Predicted Functional Partners:
BCAT1
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.844
AIFM2
Apoptosis-inducing factor 2.
      
 0.660
CDKAL1
Threonylcarbamoyladenosine tRNA methylthiotransferase.
      
 0.631
ENSLSDP00000019742
T-cell receptor-associated transmembrane adapter 1.
      
 0.565
AASDH
Acyl-CoA synthetase family member 4.
  
  
 0.562
CRYL1
Lambda-crystallin.
    
 0.552
HADH
Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial.
    
 0.552
LOC110472466
Putative low-specificity L-threonine aldolase 1.
      
 0.521
AIFM3
Apoptosis-inducing factor 3.
      
 0.516
SPRY3
Protein sprouty 3.
      
 0.476
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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