Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VAMP7Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family. (232 aa)    
Predicted Functional Partners:
SNAP23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.996
SNAP29
Synaptosomal-associated protein 29.
   
 0.980
STX8
Syntaxin-8.
   
 0.973
STX18
Syntaxin-18.
    
 0.972
STX17
Syntaxin-17; Belongs to the syntaxin family.
   
 0.971
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.957
AGFG1
Arf-GAP domain and FG repeat-containing protein 1.
    
 0.944
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
    
 0.942
STX12
Syntaxin-12; Belongs to the syntaxin family.
   
 0.941
STX7
Syntaxin-7; Belongs to the syntaxin family.
   
 0.941
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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