Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TRAF7E3 ubiquitin-protein ligase TRAF7. (670 aa)    
Predicted Functional Partners:
BIRC6
Baculoviral IAP repeat-containing protein 6.
    
 0.857
MAP3K3
Mitogen-activated protein kinase kinase kinase 3.
    
 0.856
LOC110484542
Mitogen-activated protein kinase kinase kinase 3.
    
 0.856
MIB2
E3 ubiquitin-protein ligase MIB2.
    
 0.830
RIPK4
Receptor-interacting serine/threonine-protein kinase 4.
   
 0.802
LRIT3
Visual pigment-like receptor peropsin; Belongs to the G-protein coupled receptor 1 family.
    
 0.793
ZFAND4
AN1-type zinc finger protein 4.
   
 0.790
SKP1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.722
MAP3K2
Mitogen-activated protein kinase kinase kinase 2.
    
 0.709
ENSLSDP00000008068
annotation not available
   
 0.708
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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