Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MKLN1Muskelin. (734 aa)    
Predicted Functional Partners:
GID8
Glucose-induced degradation protein 8.
    
 0.998
WDR26
WD repeat-containing protein 26.
   
 0.994
RMND5A
Protein RMD5 A.
    
 0.989
MAEA
Macrophage erythroblast attacher.
    
 0.987
ARMC8
Armadillo repeat-containing protein 8.
   
 0.971
RANBP9
Ran-binding protein 9.
   
 0.945
RANBP10
Ran-binding protein 10.
   
 0.945
GID4
Glucose-induced degradation protein 4.
    
 0.933
ZMYND19
Zinc finger MYND domain-containing protein 19.
    
 
 0.898
SFRP2
Secreted frizzled-related protein 2.
    
   0.864
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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