Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TTC39CTetratricopeptide repeat protein 39C. (572 aa)    
Predicted Functional Partners:
ENSLSDP00000011509
annotation not available
      
 0.592
TTC4
Tetratricopeptide repeat protein 4.
      
 0.588
RAB30
Ras-related protein Rab-30.
      
 0.569
TTC14
Tetratricopeptide repeat protein 14.
      
 0.544
TTC25
Tetratricopeptide repeat protein 25.
      
 0.507
TTC26
Tetratricopeptide repeat domain 26.
      
 0.494
TMEM37
Voltage-dependent calcium channel gamma-like subunit.
      
 0.435
TMEM97
Sigma intracellular receptor 2.
      
 0.431
C1orf115
Uncharacterized protein C1orf115 homolog.
      
 0.419
ZNF385D
Zinc finger protein 385D.
      
 0.408
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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