Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RAB26Ras-related protein Rab-26. (179 aa)    
Predicted Functional Partners:
PTAR1
Protein prenyltransferase alpha subunit repeat-containing protein 1.
    
  0.741
RABGGTA
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.676
LOC110471134
Rab proteins geranylgeranyltransferase component A 2.
    
 0.667
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
  0.651
TSR1-2
Pre-rRNA-processing protein TSR1 homolog.
      
 0.475
TSR1
Pre-rRNA-processing protein TSR1.
      
 0.475
ZMYND11
Zinc finger MYND domain-containing protein 11.
      
 0.437
TBC1D25
TBC1 domain family member 25.
      
 0.423
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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