Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPL4739S ribosomal protein L47, mitochondrial. (242 aa)    
Predicted Functional Partners:
MRPL17
39S ribosomal protein L17, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
   
 0.995
MRPL19
39S ribosomal protein L19, mitochondrial.
   
 0.984
MRPL41
39S ribosomal protein L41, mitochondrial.
   
 0.984
MRPL42
39S ribosomal protein L42, mitochondrial.
   
 0.984
MRPL46
39S ribosomal protein L46, mitochondrial.
   
 0.981
MRPL2
39S ribosomal protein L2, mitochondrial.
   
 0.978
MRPL21
39S ribosomal protein L21, mitochondrial.
   
 0.975
MRPL20
39S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family.
   
 0.974
MRPL30
39S ribosomal protein L30, mitochondrial.
   
 
 0.974
MRPL58
Peptidyl-tRNA hydrolase ICT1, mitochondrial.
   
  0.973
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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