Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110470965Endonuclease domain-containing 1 protein-like. (282 aa)    
Predicted Functional Partners:
TMEM43
Transmembrane protein 43.
    
 
 0.655
ENSLSDP00000008928
annotation not available
   
  
 0.538
MSL3
Male-specific lethal 3.
    
 0.532
MSL2
E3 ubiquitin-protein ligase MSL2.
    
 0.522
TM2D1
TM2 domain-containing protein 1.
      
 0.469
TMED5
Transmembrane emp24 domain-containing protein 5.
      
 0.422
LDAH
UPF0554 protein C2orf43.
   
  
 0.415
C2CD2
C2 domain-containing protein 2.
      
 0.414
TRDMT1
tRNA (Cytosine(38)-C(5))-methyltransferase.
      
 0.412
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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