Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC110482119Ubiquitinyl hydrolase 1. (464 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin-60S ribosomal protein L40.
   
 0.857
MCL1
Induced myeloid leukemia cell differentiation protein Mcl-1.
    
 
 0.855
UFD1
Ubiquitin fusion degradation protein 1.
    
 0.820
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.783
FUS1
Ubiquitin-60S ribosomal protein L40.
    
 0.783
BECN1
Beclin-1.
    
 0.775
SMC3
Structural maintenance of chromosomes protein.
    
   0.717
LOC110471805
Ubiquitin.
   
 0.703
USP10
Ubiquitin carboxyl-terminal hydrolase.
     
 0.696
ZFAND4
AN1-type zinc finger protein 4.
    
 0.672
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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