STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM17Splicing factor 45. (406 aa)    
Predicted Functional Partners:
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.992
U2SURP
U2 snRNP-associated SURP motif-containing protein.
   
 0.991
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.969
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 0.956
SF3B1
Splicing factor 3B subunit 1.
   
 0.944
SF3A2
Splicing factor 3A subunit 2.
    
 0.898
DDX46
Putative ATP-dependent RNA helicase DDX46.
   
 
 0.888
SF3A1
Splicing factor 3A subunit 1.
   
 0.888
ENSLSDP00000001413
SURP and G-patch domain-containing protein 1-like isoform X1.
   
 
 0.886
SUGP1_1
SURP and G-patch domain-containing protein 1.
   
 
 0.886
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.