STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARNPSAP domain-containing ribonucleoprotein. (131 aa)    
Predicted Functional Partners:
DDX39B
Spliceosome RNA helicase Ddx39b.
   
 0.965
ALYREF
THO complex subunit 4.
   
 0.956
POLDIP3
Polymerase delta-interacting protein 3.
   
 0.906
THOC1
THO complex subunit 1.
    
 0.901
CHTOP
Chromatin target of PRMT1 protein.
   
 0.900
ZC3H11A
Zinc finger CCCH domain-containing protein 11A.
    
 0.860
THOC7
THO complex subunit 7.
   
 0.853
FYTTD1
UAP56-interacting factor.
    
 0.810
THOC3
THO complex subunit 3.
     
 0.804
THOC2
THO complex subunit 2.
   
 0.796
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.