Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000004585annotation not available (126 aa)    
Predicted Functional Partners:
CD9
Tetraspanin.
   
 
 0.911
TSG101
Tumor susceptibility gene 101 protein.
    
 
 0.886
LAMP2
Lysosome-associated membrane glycoprotein 2.
   
 0.789
LAMP1
Lysosome-associated membrane glycoprotein 1.
   
 0.787
ANXA5
Annexin.
   
  
 0.758
RAB27A
Ras-related protein Rab-27A.
     
 0.753
TSPAN2
Tetraspanin.
    
 
 0.734
ANXA1
Annexin.
   
  
 0.734
RNF13
E3 ubiquitin-protein ligase RNF13.
   
 
 0.724
SLC29A1
Equilibrative nucleoside transporter 1.
    
 
 0.722
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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