Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF23PHD finger protein 23. (215 aa)    
Predicted Functional Partners:
SUDS3
Sin3 histone deacetylase corepressor complex component SDS3.
    
 
 0.864
KANSL2
KAT8 regulatory NSL complex subunit 2.
    
 0.766
SIN3B
Paired amphipathic helix protein Sin3b.
    
 
 0.736
SIN3A
Paired amphipathic helix protein Sin3a.
    
 
 0.736
LOC110468052
Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.
    
   0.717
ARID4B
AT-rich interactive domain-containing protein 4B.
   
 
 0.686
NUP98
Nuclear pore complex protein Nup98-Nup96.
    
 
 0.676
SAP130
Histone deacetylase complex subunit SAP130.
    
   0.639
ARID4A
AT-rich interactive domain-containing protein 4A.
   
 
 0.588
TCF25
Transcription factor 25.
      
 0.565
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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