Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SLC45A4Solute carrier family 45 member 4. (676 aa)    
Predicted Functional Partners:
SLC31A1
High affinity copper uptake protein 1.
      
 0.724
SNF8
Vacuolar-sorting protein SNF8.
    
   0.579
DENND3
DENN domain-containing protein 3.
      
 0.565
VPS25
Vacuolar protein-sorting-associated protein 25.
    
   0.551
CHRAC1
Chromatin accessibility complex protein 1.
   
  
 0.542
SLC35B3
Adenosine 3'-phospho 5'-phosphosulfate transporter 2.
      
 0.521
SLC24A5
Solute carrier family 24 (sodium/potassium/calcium exchanger), member 5.
   
  
 0.484
RASGRF1
Ras-specific guanine nucleotide-releasing factor 1.
   
  
 0.461
TRAPPC9
Trafficking protein particle complex subunit 9.
      
 0.454
TYRP1
5,6-dihydroxyindole-2-carboxylic acid oxidase.
      
 0.449
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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