STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM23Putative RNA-binding protein 23. (251 aa)    
Predicted Functional Partners:
CDC5L
Cell division cycle 5-like protein.
   
 
 0.863
SON
Protein SON.
   
  0.855
U2AF2
Splicing factor U2AF subunit.
   
 
 0.825
DDX5
Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
   
 0.810
LUC7L3
Luc7-like protein 3.
   
 0.788
ENSLSDP00000024472
annotation not available
   
 0.727
RBM25
RNA-binding protein 25.
   
 0.727
PRPF40A
Pre-mRNA-processing factor 40 A.
   
  0.723
SF3B1
Splicing factor 3B subunit 1.
   
 
 0.698
ENSLSDP00000011296
annotation not available
    
 
 0.691
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.