STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000004642annotation not available (161 aa)    
Predicted Functional Partners:
GSAP
Gamma-secretase-activating protein.
 
     0.908
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.890
NBR1
Next to BRCA1 gene 1 protein.
    
 0.840
MAP1LC3A
Microtubule-associated proteins 1A/1B light chain 3A.
   
 0.768
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.768
PRKCI
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.742
PRKCZ
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.742
KLHL18
Kelch-like protein 18.
    
 0.703
KLHL20
Kelch-like protein 20.
    
 0.703
KLHL17
Kelch-like protein 17.
    
 0.703
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.