Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USP6NLUSP6 N-terminal-like protein. (861 aa)    
Predicted Functional Partners:
RAB19
Ras-related protein Rab-19.
    
 0.851
RAB43
Ras-related protein Rab-43.
    
 0.760
RABGEF1
Rab5 GDP/GTP exchange factor.
   
 
 0.521
FAM214B
Protein FAM214B.
      
 0.443
RHNO1
RAD9, HUS1, RAD1-interacting nuclear orphan protein 1.
      
 0.437
RAB5C
Ras-related protein Rab-5C.
    
 0.433
RAB17
Ras-related protein Rab-17.
    
 0.433
RAB5A
Ras-related protein Rab-5A.
    
 0.433
COMMD2
COMM domain-containing protein 2.
      
 0.431
RAB33A
Ras-related protein Rab-33A.
    
 0.426
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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