Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NOLC1Nucleolar and coiled-body phosphoprotein 1. (666 aa)    
Predicted Functional Partners:
NOP56
Nucleolar protein 56.
   
 
 0.994
NOP58
Nucleolar protein 58.
   
 
 0.980
DKC1
H/ACA ribonucleoprotein complex subunit 4.
   
 
 0.975
RSL1D1
Ribosomal L1 domain-containing protein 1.
   
 
 0.942
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
   0.897
PINX1
PIN2/TERF1-interacting telomerase inhibitor 1.
   
 
 0.878
BRIX1
Ribosome biogenesis protein BRX1.
   
  
 0.877
WDR43
WD repeat-containing protein 43.
   
 
 0.870
GNL3
Guanine nucleotide-binding protein-like 3.
   
  
 0.845
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.838
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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