Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UPF2Regulator of nonsense transcripts 2. (1271 aa)    
Predicted Functional Partners:
UPF1
Regulator of nonsense transcripts 1.
   
 0.999
RNPS1
RNA-binding protein with serine-rich domain 1.
    
 0.997
CASC3
Protein CASC3.
    
 0.993
UPF3B
Regulator of nonsense transcripts 3B.
   
 0.990
SMG1
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
   
 
 0.990
UPF3A
Regulator of nonsense transcripts 3A.
   
 0.990
MAGOH
Protein mago nashi 2.
    
 0.980
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
 0.972
LOC110467861
RNA-binding protein 8A.
    
 0.964
LOC110467863
RNA-binding protein 8A.
    
 0.964
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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