LOC110481399 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110481399

Thyroid adenoma-associated. (1501 aa)

Predicted Functional Partners:

FTSJ3

0.698

MRM2

0.688

WDR6

0.609

TRMT11

0.541

TRMT61A

0.524

WDR4

0.522

TRMT6

0.491

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FTSJ3	LOC110481399	ENSLSDP00000004322	ENSLSDP00000004705	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Thyroid adenoma-associated.	0.698
FTSJ3	TRMT11	ENSLSDP00000004322	ENSLSDP00000022604	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	tRNA (Guanine(10)-N2)-methyltransferase.	0.676
FTSJ3	TRMT6	ENSLSDP00000004322	ENSLSDP00000008884	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.949
FTSJ3	TRMT61A	ENSLSDP00000004322	ENSLSDP00000023939	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.809
FTSJ3	WDR4	ENSLSDP00000004322	ENSLSDP00000022222	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.	0.821
FTSJ3	WDR6	ENSLSDP00000004322	ENSLSDP00000010685	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	WD repeat-containing protein 6.	0.907
LOC110481399	FTSJ3	ENSLSDP00000004705	ENSLSDP00000004322	Thyroid adenoma-associated.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.698
LOC110481399	MRM2	ENSLSDP00000004705	ENSLSDP00000001494	Thyroid adenoma-associated.	rRNA methyltransferase 2, mitochondrial.	0.688
LOC110481399	TRMT11	ENSLSDP00000004705	ENSLSDP00000022604	Thyroid adenoma-associated.	tRNA (Guanine(10)-N2)-methyltransferase.	0.541
LOC110481399	TRMT6	ENSLSDP00000004705	ENSLSDP00000008884	Thyroid adenoma-associated.	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.491
LOC110481399	TRMT61A	ENSLSDP00000004705	ENSLSDP00000023939	Thyroid adenoma-associated.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.524
LOC110481399	WDR4	ENSLSDP00000004705	ENSLSDP00000022222	Thyroid adenoma-associated.	tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.	0.522
LOC110481399	WDR6	ENSLSDP00000004705	ENSLSDP00000010685	Thyroid adenoma-associated.	WD repeat-containing protein 6.	0.609
MRM2	LOC110481399	ENSLSDP00000001494	ENSLSDP00000004705	rRNA methyltransferase 2, mitochondrial.	Thyroid adenoma-associated.	0.688
MRM2	TRMT11	ENSLSDP00000001494	ENSLSDP00000022604	rRNA methyltransferase 2, mitochondrial.	tRNA (Guanine(10)-N2)-methyltransferase.	0.556
MRM2	TRMT6	ENSLSDP00000001494	ENSLSDP00000008884	rRNA methyltransferase 2, mitochondrial.	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.768
MRM2	TRMT61A	ENSLSDP00000001494	ENSLSDP00000023939	rRNA methyltransferase 2, mitochondrial.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.551
MRM2	WDR4	ENSLSDP00000001494	ENSLSDP00000022222	rRNA methyltransferase 2, mitochondrial.	tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.	0.677
MRM2	WDR6	ENSLSDP00000001494	ENSLSDP00000010685	rRNA methyltransferase 2, mitochondrial.	WD repeat-containing protein 6.	0.924
TRMT11	FTSJ3	ENSLSDP00000022604	ENSLSDP00000004322	tRNA (Guanine(10)-N2)-methyltransferase.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.676