Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
TM9SF3Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (581 aa)    
Predicted Functional Partners:
CASC4
Protein CASC4.
   
  
 0.887
SMIM7
Small integral membrane protein 7.
      
 0.872
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
      
 0.692
TMED4
Transmembrane emp24 domain-containing protein 4.
   
  
 0.691
TMEM87A
Transmembrane protein 87A.
      
 0.668
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
      
 0.663
LPGAT1
Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.
    
   0.607
CCDC186
Coiled-coil domain-containing protein 186.
      
 0.576
ASB8
Ankyrin repeat and SOCS box protein 8.
      
 0.568
YIPF3
Protein YIPF3.
   
   0.547
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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