Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXC13Homeobox protein Hox-C12a. (269 aa)    
Predicted Functional Partners:
FOXN1
Forkhead box protein N1.
    
 
 0.762
MSX2
Homeobox protein MSX-2.
   
  
 0.693
LEF1
Lymphoid enhancer-binding factor 1.
    
 
 0.596
RNF41
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NRDP1.
      
 0.580
RAB27A
Ras-related protein Rab-27A.
      
 0.568
VSIG8
V-set and immunoglobulin domain containing 8.
      
 0.525
FOXN4
Forkhead box protein N4.
    
 
 0.472
FOXQ1
Forkhead box protein Q1.
    
 
 0.445
DLX3
Homeobox protein DLX-3.
    
 
 0.441
LOC110483097
Retinoic acid-induced protein 3.
      
 0.434
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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